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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_81184006_81184137_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
81184006 - 81184137
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTAAC
5'SS Class:
strong_major
3'SS Sequence:
CACAAACCATCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCCACAAAC
Flanking Amino Acid:
NHLDGVDAKKYSKYTCEIQY
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
83.3
28.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
53.8
0.09
1
48.8
38.8
Minor 5ss
36.1
-1.6
2.7
45.4
42.7
Minor BPS
59.2
0.27
1.9
77.61
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026164
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048059
81178698 - 81195718
17021