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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_81185012_81185584_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81185012 - 81185584
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTAAA
5'SS Class:
major
3'SS Sequence:
TTTCACTATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTATCTCAAAT
Flanking Amino Acid:
MVDQYLQYIQSLPAYDTPEV
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
75.3
36.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.2
0.57
0.9
70.6
34.8
Minor 5ss
30
-2.3
2.7
33.5
41.8
Minor BPS
56.4
0.28
1.7
74.03
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026164
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048059
81178698 - 81195718
17021