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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_81193085_81195566_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
81193085 - 81195566
Intron Length:
2482

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCCATAATT
5'SS Class:
weak_major
3'SS Sequence:
TCTGTCTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATG
Flanking Amino Acid:
IRIYSFAAIRTSKDPRLYSC
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.7
0.18
1.3
70
40.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.3
0.73
0.8
80.3
31.7
Minor 5ss
26.3
-2.7
3.9
41.8
38.4
Minor BPS
78
0.74
1.1
78.3
32.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026164
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048059
81178698 - 81195718
17021