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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_81277417_81291345_F

Intron Information:

Intron Rank:
137951
Intron Class:
major
Intron Phase:
Intron Coordinates:
81277417 - 81291345
Intron Length:
13929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TGATTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATCATTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.8
38.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.4
0.8
0.8
80
37.3
Minor 5ss
35.1
-1.7
2.7
42.5
44.3
Minor BPS
64.8
0.55
1.6
79.46
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024254
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018490
81276878 - 81291885
15008