About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_81593862_81596014_F

Intron Information:

Intron Rank:
126378
Intron Class:
major
Intron Phase:
Intron Coordinates:
81593862 - 81596014
Intron Length:
2153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TGTTGCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TAGTCTTTTACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
69.3
43.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.8
0.54
0.9
65.9
40.9
Minor 5ss
37
-1.5
2.7
47
41.7
Minor BPS
65
0.46
1.6
71.23
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018088
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028459
81593664 - 81596649
2986