Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_81596207_81596302_F

Intron Information:

Intron Rank:

126379

Intron Class:

major

Intron Phase:

Intron Coordinates:

81596207 - 81596302

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTTCCTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGTT

U12 Branch Point Sequence:

TTTTGTTTGTTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

1.2

76.2

39.9

Major BPS

38.1

-0.7

4.3

71.4

45.1

Major PPT

85.9

0.81

0.7

84.9

29.9

Minor 5ss

31.5

-2.1

2.5

37.7

39.6

Minor BPS

42.8

-0.4

3.6

78.01

39.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018088

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028459

81593664 - 81596649

2986