About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8163798_8165378_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8163798 - 8165378
Intron Length:
1581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTTTAAGCT
5'SS Class:
weak_major
3'SS Sequence:
CTCCTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAAAAAA
U12 Branch Point Sequence:
TCCTCCTTTTCT
Flanking Amino Acid:
KIWADFKKFWGESLVEEPED
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.1
0.05
1.2
50.6
38.5
Major BPS
44.4
-0.3
1.1
45.6
33.7
Major PPT
85
0.79
0.7
79.9
25.5
Minor 5ss
34.4
-1.8
3.3
40.9
45.1
Minor BPS
45.2
-0.2
3.6
75.7
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021720
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038199
8163582 - 8169089
5508