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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_81814052_81816755_F

Intron Information:

Intron Rank:
142441
Intron Class:
major
Intron Phase:
Intron Coordinates:
81814052 - 81816755
Intron Length:
2704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TGTCTTTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.7
90.9
28.7
Major BPS
84.6
0.86
1
74
41.2
Major PPT
77.6
0.62
0.9
73.6
35.7
Minor 5ss
39.3
-1.2
2.8
50.6
45.9
Minor BPS
59.4
0.29
1.5
69.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026735
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025626
81813985 - 81817699
3715