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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_81938059_81939280_R

Intron Information:

Intron Rank:
151604
Intron Class:
major
Intron Phase:
Intron Coordinates:
81938059 - 81939280
Intron Length:
1222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
TTACCCATTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
37.9
-1.4
3.3
56.5
47.6
Minor BPS
52.7
0.16
1.9
75.73
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029117
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042828
81938028 - 81941854
3827