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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82050329_82114073_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
82050329 - 82114073
Intron Length:
63745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CCATAAATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTCCATAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
73.7
33.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
67.2
0.39
1
59.1
40.3
Minor 5ss
33.6
-1.9
3
41.1
45.4
Minor BPS
75.8
0.89
1.7
94.83
31.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028170
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025214
82049887 - 82354937
305051