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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8208341_8208705_R

Intron Information:

Intron Rank:
150582
Intron Class:
major
Intron Phase:
Intron Coordinates:
8208341 - 8208705
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACCTCA
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTGAT
U12 Branch Point Sequence:
ATAGCATTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.2
64.6
38
Major BPS
70.8
0.52
1.2
63.4
44.3
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
44.2
-0.6
2.8
56.9
47.3
Minor BPS
50.7
0.1
2
72.56
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028510
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040555
8207900 - 8208819
920