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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82240631_82331697_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82240631 - 82331697
Intron Length:
91067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTTCTTTACA
Flanking Amino Acid:
GSETGSMSSISSTEEQFHWQ
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
77.6
33.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
92.2
0.95
0.6
87.4
23.1
Minor 5ss
38.5
-1.3
3.4
55.5
48.6
Minor BPS
71
0.65
1.6
78.67
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028170
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043113
82114079 - 82354937
240859
ENSAPLT00000036711
82007603 - 82354937
347335
ENSAPLT00000025214
82049887 - 82354937
305051