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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8226562_8236011_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8226562 - 8236011
Intron Length:
9450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTGCCTTTATTT
Flanking Amino Acid:
MAAALGGGADDDFDQFDKP
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
67.2
38.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
87.2
0.84
0.7
81.3
24
Minor 5ss
26.2
-2.7
3.2
34.3
42
Minor BPS
61.9
0.45
1.6
76.92
40.3

Associated Gene:

Gene:
RBM33
Ensembl Gene ID:
ENSAPLG00000007387
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007669
8226534 - 8321866
95333