About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8236091_8241218_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8236091 - 8241218
Intron Length:
5128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TAATATTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CTTTCCAAAATT
Flanking Amino Acid:
RRRAGDDEWDSELDDDLLGE
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.1
38.4
Major BPS
84.4
0.85
1
84
34.5
Major PPT
78.8
0.65
0.9
69.9
45
Minor 5ss
28.3
-2.5
2.8
33.2
41.9
Minor BPS
58.9
0.36
2
80.51
41.8

Associated Gene:

Gene:
RBM33
Ensembl Gene ID:
ENSAPLG00000007387
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007669
8226534 - 8321866
95333