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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8243360_8245446_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8243360 - 8245446
Intron Length:
2087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACCTTTT
5'SS Class:
weak_major
3'SS Sequence:
CCCTATACTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TATATTTCAACC
Flanking Amino Acid:
QSDNEEEHAFGSQGVTVSLD
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.3
69.9
43.4
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
68.3
0.41
0.9
61.6
33.3
Minor 5ss
50.7
0.02
2.8
67
44.3
Minor BPS
58.5
0.25
1.5
68.26
37

Associated Gene:

Gene:
RBM33
Ensembl Gene ID:
ENSAPLG00000007387
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007669
8226534 - 8321866
95333