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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82466779_82489822_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82466779 - 82489822
Intron Length:
23044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TGGCCTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TATTCCCTAATG
Flanking Amino Acid:
CFGDNKIKAEIRRQGGIQLL
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
27.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
72.8
0.51
1
69
41.8
Minor 5ss
40.6
-1.1
3.1
57.4
46.8
Minor BPS
68.3
0.44
1.7
73.63
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016359
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017073
82366304 - 82633795
267492