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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82505038_82544421_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82505038 - 82544421
Intron Length:
39384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTGAC
U12 Branch Point Sequence:
AGGTGGTGACCT
Flanking Amino Acid:
QVLRNATGCLRNVSSAGEEA
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
76.9
33.4
Major BPS
56.2
0.15
1.3
48.8
46.3
Major PPT
80.6
0.69
0.9
73.7
36.9
Minor 5ss
29.5
-2.3
2.7
34.5
41.2
Minor BPS
38.1
-0.8
2.5
55.6
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016359
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017073
82366304 - 82633795
267492