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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8253446_8259988_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8253446 - 8259988
Intron Length:
6543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TCTTTTTTAACA
Flanking Amino Acid:
RERRNIPETLELSAEAKAAL
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
81.1
26.4
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
86.9
0.83
0.8
84.4
29
Minor 5ss
37.1
-1.5
3.2
49.9
46.6
Minor BPS
80
0.94
1
82.25
33.1

Associated Gene:

Gene:
RBM33
Ensembl Gene ID:
ENSAPLG00000007387
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007669
8226534 - 8321866
95333