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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82554425_82564831_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82554425 - 82564831
Intron Length:
10407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCTTCTTCATG
Flanking Amino Acid:
LQNLAAGSWKWSVYIRAAVR
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82.9
0.74
0.9
76.3
37.8
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
59.3
0.15
1.8
66.07
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016359
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017073
82366304 - 82633795
267492