Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82564983_82594575_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

82564983 - 82594575

Intron Length:

29593

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTATGTTCT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTCAACAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAA

U12 Branch Point Sequence:

TTTCTTTCAACA

Flanking Amino Acid:

ALDVRNKELIGKYAMRDLVH

Intron Amino Acid Position:

550

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.2

0.92

0.8

83.2

29.4

Major BPS

78.4

0.71

0.9

81.3

29.8

Major PPT

63.4

0.3

1.1

64.5

34.6

Minor 5ss

48.9

-0.1

2.4

68.1

42.9

Minor BPS

65.3

0.48

1.5

76.67

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016359

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017073

82366304 - 82633795

267492