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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82594787_82598134_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
82594787 - 82598134
Intron Length:
3348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
ATGTATGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCTTTTTAATA
Flanking Amino Acid:
LVGISKSKGDKHSPKVVKAA
Intron Amino Acid Position:
620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
83.3
29.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
64.7
0.33
1.1
58.7
45.5
Minor 5ss
63.8
0.47
2.2
75.6
33.8
Minor BPS
75.4
0.79
1.1
78
33.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016359
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017073
82366304 - 82633795
267492