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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82598220_82604227_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82598220 - 82604227
Intron Length:
6008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TGATTTATGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TGTTTAATAAAT
Flanking Amino Acid:
YRDLRSLYKKWAAPSFTVAE
Intron Amino Acid Position:
649

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
70.1
0.45
1.1
66.6
43.7
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
50.9
0.11
2
76.38
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016359
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017073
82366304 - 82633795
267492