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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8260198_8262039_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8260198 - 8262039
Intron Length:
1842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACCTTTT
5'SS Class:
weak_major
3'SS Sequence:
GCTTCCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACAAT
U12 Branch Point Sequence:
GCTTCCTTTACA
Flanking Amino Acid:
ALLPNQPSTMHQHHSSPPPG
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.43
1.2
71.6
40.8
Major BPS
65.2
0.38
1.3
73.4
38.5
Major PPT
82.6
0.73
0.8
75.9
32.7
Minor 5ss
52.7
0.09
2.8
72.8
38.9
Minor BPS
71.6
0.67
1.6
76.35
40.5

Associated Gene:

Gene:
RBM33
Ensembl Gene ID:
ENSAPLG00000007387
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007669
8226534 - 8321866
95333