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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82623395_82630605_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82623395 - 82630605
Intron Length:
7211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAA
U12 Branch Point Sequence:
TTTGGTAAAACT
Flanking Amino Acid:
EHTSRKDTMTAQSTGISTLY
Intron Amino Acid Position:
777

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.9
23.9
Major BPS
60.1
0.25
1.3
61.7
43.1
Major PPT
88.8
0.87
0.6
81.4
30.7
Minor 5ss
36.1
-1.6
3.2
46.9
48.4
Minor BPS
45.1
-0.2
2.3
72
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016359
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017073
82366304 - 82633795
267492