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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82630680_82633534_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82630680 - 82633534
Intron Length:
2855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
TGCTATCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TTGCATCTAACA
Flanking Amino Acid:
APAEDIKHNQVSTQPVPQEP
Intron Amino Acid Position:
802

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
67.1
44.6
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
80.5
0.69
0.9
77.1
36.8
Minor 5ss
35.7
-1.6
3.3
46.8
48.5
Minor BPS
50.2
0
1.8
66.66
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016359
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017073
82366304 - 82633795
267492