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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82725665_82731703_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
82725665 - 82731703
Intron Length:
6039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGTGCCG
5'SS Class:
weak_major
3'SS Sequence:
ACTTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTCTCCATTACT
Flanking Amino Acid:
AETRAGHPPAVKAGGMRIVQ
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.1
0.17
1.2
42
44.6
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
88.3
0.86
0.7
80.8
36.2
Minor 5ss
30.2
-2.3
3.5
39.9
45.7
Minor BPS
64.4
0.53
2
85.47
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021887
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040853
82725175 - 82770328
45154