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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82731801_82767650_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82731801 - 82767650
Intron Length:
35850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATCCCTTTTATT
Flanking Amino Acid:
DKDDQDWETSSPPKPTVFIS
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
86.9
30.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
100
1.12
0.4
100
0
Minor 5ss
39.9
-1.1
3.1
56.9
47.4
Minor BPS
56.3
0.28
1.6
71.26
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021887
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040853
82725175 - 82770328
45154