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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82767694_82769394_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82767694 - 82769394
Intron Length:
1701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TGTTCTTCAAAC
Flanking Amino Acid:
TVFISGVIARGDKDFPPAAA
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
77.8
33.3
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
70.9
0.47
1
66.7
38.5
Minor 5ss
41.1
-1
3.1
48.1
47.5
Minor BPS
62.8
0.38
1.6
72.98
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021887
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040853
82725175 - 82770328
45154