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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82791037_82796113_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82791037 - 82796113
Intron Length:
5077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCCTTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
GTTTCATTAATT
Flanking Amino Acid:
TECVKALMLAGANVHSTDPS
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.9
35.2
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
68.3
0.41
1.7
81.3
30.8
Minor 5ss
44.8
-0.6
2.6
56.7
47.6
Minor BPS
76.8
0.92
1.5
90.31
33.1

Associated Gene:

Gene:
ANKRD33B
Ensembl Gene ID:
ENSAPLG00000016329
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017039
82790186 - 82828134
37949