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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82861110_82862615_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82861110 - 82862615
Intron Length:
1506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GTTCAACTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTACTAATAACA
Flanking Amino Acid:
SVKEGIGYSEGSYSSLPVEV
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
73.7
0.53
1
62.9
43
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
50.2
0
1.9
68.12
37.2

Associated Gene:

Gene:
SNRNP48
Ensembl Gene ID:
ENSAPLG00000016279
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016986
82859012 - 82865909
6898