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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82863842_82864208_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82863842 - 82864208
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTAATCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AAATCTTTAATC
Flanking Amino Acid:
VHITKKSYTEVIRDVIGVHM
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.7
84.8
25.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
80.5
0.69
0.9
74.1
35.2
Minor 5ss
31.8
-2.1
3.3
42.9
44.7
Minor BPS
72.1
0.67
1.1
70.88
34

Associated Gene:

Gene:
SNRNP48
Ensembl Gene ID:
ENSAPLG00000016279
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016986
82859012 - 82865909
6898