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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8286463_8287256_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8286463 - 8287256
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
AATATCTGCATT
Flanking Amino Acid:
QRQGPMKPRHNTPSQNIVKR
Intron Amino Acid Position:
659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
77
31.3
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
86.7
0.83
0.7
84.4
30.6
Minor 5ss
34
-1.8
2.7
42.8
36.9
Minor BPS
46.5
-0.1
1.9
64.91
39.6

Associated Gene:

Gene:
RBM33
Ensembl Gene ID:
ENSAPLG00000007387
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007669
8226534 - 8321866
95333