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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82865483_82865611_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82865483 - 82865611
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
TCAGTCTAACAG
Flanking Amino Acid:
KDRESRRKREREEDKYHSHK
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
80.2
30.7
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
42
-0.9
3
55.3
48.9
Minor BPS
39.7
-0.9
2
40.06
44.1

Associated Gene:

Gene:
SNRNP48
Ensembl Gene ID:
ENSAPLG00000016279
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016986
82859012 - 82865909
6898