About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82869940_82870115_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82869940 - 82870115
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAACC
5'SS Class:
major
3'SS Sequence:
GTTTTGTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTGTTTACAG
Flanking Amino Acid:
PGLLKVLHKQLSPKGMVSVE
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
66
38
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
86
0.81
0.8
79.9
37.7
Minor 5ss
33
-1.9
3.2
44.5
43
Minor BPS
49.1
-0.2
2.2
63.96
44.2

Associated Gene:

Gene:
ROPN1L
Ensembl Gene ID:
ENSAPLG00000016260
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033299
82866283 - 82873107
6825
ENSAPLT00000016968
82866297 - 82873696
7400