About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82872808_82873645_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
82872808 - 82873645
Intron Length:
838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCCTT
5'SS Class:
major
3'SS Sequence:
TTATTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
GTTTTGTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
67.2
43.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
90.5
0.91
0.7
89.1
27.5
Minor 5ss
50
0
2.8
74.1
42.3
Minor BPS
50.7
0.1
2.2
75.8
41.6

Associated Gene:

Gene:
ROPN1L
Ensembl Gene ID:
ENSAPLG00000016260
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016968
82866297 - 82873696
7400