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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8287545_8294855_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8287545 - 8294855
Intron Length:
7311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTTATAAAT
Flanking Amino Acid:
AKPEAKSETEYPDEDEETRL
Intron Amino Acid Position:
755

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.2
1.16
0.6
97
9.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84
0.77
0.7
80.3
25
Minor 5ss
46.1
-0.4
2.8
66.9
44.4
Minor BPS
59.7
0.38
1.7
79.08
36.5

Associated Gene:

Gene:
RBM33
Ensembl Gene ID:
ENSAPLG00000007387
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007669
8226534 - 8321866
95333