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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82882126_82884878_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82882126 - 82884878
Intron Length:
2753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
ATTATAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTATAATT
Flanking Amino Acid:
KRLYEHIKNDKYLVGQRLVN
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.1
0.59
1
71.8
42.2
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
61.4
0.44
1.6
80.96
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013193
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013797
82882035 - 82902913
20879