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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82885015_82885751_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82885015 - 82885751
Intron Length:
737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATTAT
U12 Branch Point Sequence:
AATGCCAGATTA
Flanking Amino Acid:
IIASGVVPLLGVTAEMQNLV
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.3
29.4
Major BPS
60.8
0.27
1.2
51.8
43.6
Major PPT
91.7
0.94
0.6
88.8
20.4
Minor 5ss
38.2
-1.3
3
51
45.5
Minor BPS
42.6
-0.5
1.9
52.99
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013193
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013797
82882035 - 82902913
20879