About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82888415_82889537_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82888415 - 82889537
Intron Length:
1123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTGGATGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATGTCTTGGATG
Flanking Amino Acid:
FQKVKEWSLMIMKTLIVAIL
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
79.6
35.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
69.3
0.43
1
66.1
45
Minor 5ss
34.9
-1.7
3.1
47.1
42.6
Minor BPS
52
-0
1.5
56.73
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013193
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013797
82882035 - 82902913
20879