About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82889720_82890910_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82889720 - 82890910
Intron Length:
1191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
AAGTACTTAAAA
Flanking Amino Acid:
IASLICLTLPVFAGRWLMSF
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
59.8
0.3
1.6
65.84
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013193
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013797
82882035 - 82902913
20879