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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82895172_82897326_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82895172 - 82897326
Intron Length:
2155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
AACTGGTTAACT
Flanking Amino Acid:
RHLRRFILSVIVFGSIVLLM
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
84.3
33.3
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
84.5
0.78
0.8
79.8
32.1
Minor 5ss
38.3
-1.3
3.4
54.5
43.9
Minor BPS
49.4
0.03
2.4
71.2
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013193
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013797
82882035 - 82902913
20879