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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82897447_82897917_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82897447 - 82897917
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCACTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTCCCTTGATG
Flanking Amino Acid:
FASFILLLREVLRPGVLWFL
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
77.6
0.62
0.7
75.3
28.3
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
74.7
0.63
1.3
76.25
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013193
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013797
82882035 - 82902913
20879