About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82898053_82898851_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82898053 - 82898851
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTATA
5'SS Class:
strong_major
3'SS Sequence:
ACTTACCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTACTTACCT
Flanking Amino Acid:
CGWWLDICSLEMFDATLKDR
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
79.8
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.4
0.55
0.8
70.8
35.1
Minor 5ss
38.1
-1.3
3.1
47.2
43.7
Minor BPS
68.3
0.65
1.8
86.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013193
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013797
82882035 - 82902913
20879