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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82899638_82902880_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
82899638 - 82902880
Intron Length:
3243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTTTTTTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTCCCCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
AGACTGATAAAT
Flanking Amino Acid:
EFPVCRSCSYVQASHFEGLI
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55
0.12
1.3
61.9
37.2
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
83
0.74
0.7
74.2
30.9
Minor 5ss
49.7
-0
2.3
67.3
36.6
Minor BPS
40.5
-0.6
2.2
55.9
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013193
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013797
82882035 - 82902913
20879