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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82922492_82923358_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82922492 - 82923358
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CATGTATTAATG
Flanking Amino Acid:
TGSIKFIHQECLVQWLKHSR
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
88.5
0.86
0.8
84
31
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
48.9
-0.2
1.8
52.76
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023780
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018943
82918523 - 82927304
8782