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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82923456_82927285_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82923456 - 82927285
Intron Length:
3830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGCGA
5'SS Class:
major
3'SS Sequence:
TCCTGTTCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTAAGCAGAAGA
Flanking Amino Acid:
METAEEDICRVCRSEG
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64
0.33
1.3
51.6
46.8
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
73.6
0.53
0.9
69.7
35.4
Minor 5ss
34.6
-1.8
3.5
48
47.4
Minor BPS
40.5
-0.7
2.2
55.12
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023780
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018943
82918523 - 82927304
8782