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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82947690_82949796_F

Intron Information:

Intron Rank:
5
Intron Class:
major_hybrid
Intron Phase:
0
Intron Coordinates:
82947690 - 82949796
Intron Length:
2107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTACTGGAGGAG|A
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
CTTTCTTTTACA
Flanking Amino Acid:
EKDHTISHDQKLKQYCKVAY
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
74.2
0.6
1
67
39.4
Major PPT
46.3
-0.2
1.7
50.6
42.6
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
70.8
0.65
1.6
78.96
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013173
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034547
82939557 - 82949958
10402