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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82948821_83010296_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82948821 - 83010296
Intron Length:
61476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
AATATTTTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
TCAGTCTAAAAT
Flanking Amino Acid:
KQQHVIETLIVKKKLFLIFS
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.9
31.6
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
66
0.36
1.1
62
43.5
Minor 5ss
33.9
-1.8
2.9
40.8
39.5
Minor BPS
48.7
-0
1.9
65.06
45.4

Associated Gene:

Gene:
CCT5
Ensembl Gene ID:
ENSAPLG00000012960
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039146
82947683 - 83017489
69807