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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82956282_82957748_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82956282 - 82957748
Intron Length:
1467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTATATGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GGGTGCTTAATT
Flanking Amino Acid:
WKLEIPEKINKDAYAVLKYL
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
73.2
38.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.3
0.64
1
69.6
45.4
Minor 5ss
40.2
-1.1
3.4
55.7
43.1
Minor BPS
61.6
0.44
1.8
73.33
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021678
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017387
82955148 - 82961104
5957