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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82961020_82961059_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
82961020 - 82961059
Intron Length:
40

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTACATCAC
5'SS Class:
weak_major
3'SS Sequence:
GCCTTATATTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTATAT
U12 Branch Point Sequence:
TAAGCCTTATAT
Flanking Amino Acid:
KIYPGQTHGFEGRKDMINWL
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.7
0.13
1.1
51.5
39.5
Major BPS
66.9
0.42
1.1
64.7
41.3
Major PPT
50.7
0.02
1.7
62.1
42.7
Minor 5ss
35.4
-1.7
3.3
49.1
41.7
Minor BPS
54.7
0.23
1.8
71.59
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021678
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017387
82955148 - 82961104
5957